PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045166
Common NameLOC102589769
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 261aa    MW: 29203.2 Da    PI: 6.5977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045166genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-1892141255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr +  +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a+++++g
  PGSC0003DMP400045166  92 TYRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 141
                           69****887.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-1392141IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2292150IPR016177DNA-binding domain
SMARTSM003808.2E-3692155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-3292150IPR001471AP2/ERF domain
PROSITE profilePS5103223.55192149IPR001471AP2/ERF domain
PRINTSPR003671.3E-1093104IPR001471AP2/ERF domain
CDDcd000181.03E-3293151No hitNo description
PRINTSPR003671.3E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEDHNEFSIS SSTTTSSFTS CCSNNNCLSS TSTSSTSSNC FHESIAKTSP NDHYKCKSKK  60
SSKKIQDGNE EEDDNKKIRR KNEGVVDEKH PTYRGVRKRN WGKWVSEIRQ PRKKSRIWLG  120
TYPTAEMAAR AHDVAALAIK GDSAYLNFPH LADQLPRPAS TSPKDIQAAA AKAAAANIFL  180
EEKSQLTELH SSHSSTNLAS QELLNSPSMD HDDPFFDLPD LTIDRVDQND RYQYPISTWQ  240
LAGADSGMFR LDEPFLWECY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1986150873Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2335210.0AC233521.1 Solanum tuberosum cultivar RH89-039-16 chromosome 1 clone RH165C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347933.10.0PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ79e-60ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLM1CGG50.0M1CGG5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000669770.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]