PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045417
Common NameLOC107063249
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 244aa    MW: 28219.3 Da    PI: 6.0972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045417genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.4e-151461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g WT eEd++l+ +++++G+ +W+  +++ g+ R++k+c++rw ++l
  PGSC0003DMP400045417 14 KGTWTLEEDKKLAAYITKYGSWNWRQLPKYAGLARCGKSCRLRWINHL 61
                          799******************************************996 PP
2Myb_DNA-binding58.71.3e-1867111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+ T+eEde+++++++qlG++ W+tIa++++  R+++++k++w++ 
  PGSC0003DMP400045417  67 RGNYTKEEDEIILNLHAQLGNK-WSTIAAHLP-ERSDNEIKNHWHTT 111
                           899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.859961IPR017930Myb domain
SuperFamilySSF466895.86E-2911108IPR009057Homeodomain-like
SMARTSM007171.2E-91363IPR001005SANT/Myb domain
PfamPF002495.3E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-221568IPR009057Homeodomain-like
CDDcd001671.05E-71661No hitNo description
PROSITE profilePS5129426.01962116IPR017930Myb domain
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002497.5E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2569115IPR009057Homeodomain-like
CDDcd001675.51E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVRTPCYDES GRKKGTWTLE EDKKLAAYIT KYGSWNWRQL PKYAGLARCG KSCRLRWINH  60
LRPNVKRGNY TKEEDEIILN LHAQLGNKWS TIAAHLPERS DNEIKNHWHT TLKKRATNFN  120
NKNNIESNTG RKITSVENQN ASANNNNNMH ENIVLESSEW SPKEPSSEAL SSIDYQQDIF  180
QEELANLEEI TSGSFWTEPF EVDSQNDFVA PSIDYCGLVC PPSPFIPHEF LSFFDLDHYN  240
YNW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045417
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170361.10.0PREDICTED: myb-related protein 308-like
TrEMBLM1CH270.0M1CH27_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000673180.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-54myb domain protein 14
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]