PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045419
Common NameLOC102595712
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 246aa    MW: 28536.4 Da    PI: 5.4048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045419genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g WT+eEd +l+d+++++G+ +W+  +++ g+ R++k+c++rw +yl
  PGSC0003DMP400045419 14 KGTWTPEEDRKLADYITKYGSWNWRQLPKYAGLERCGKSCRLRWMNYL 61
                          799*******************************************97 PP
2Myb_DNA-binding57.43.4e-1867110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T+eEde+++++++qlG++ W++I+ +++ gR+++++k++w++
  PGSC0003DMP400045419  67 RGNYTKEEDEIILNLHAQLGNK-WSAISVHLP-GRSDNEIKNHWHT 110
                           899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.692961IPR017930Myb domain
SuperFamilySSF466891.06E-2911108IPR009057Homeodomain-like
SMARTSM007178.4E-121363IPR001005SANT/Myb domain
PfamPF002498.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231568IPR009057Homeodomain-like
CDDcd001671.21E-81661No hitNo description
PROSITE profilePS5129425.10862116IPR017930Myb domain
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002496.9E-1667110IPR001005SANT/Myb domain
CDDcd001671.70E-1069110No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2569115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVRTPCRDEN GRKKGTWTPE EDRKLADYIT KYGSWNWRQL PKYAGLERCG KSCRLRWMNY  60
LRPNVKRGNY TKEEDEIILN LHAQLGNKWS AISVHLPGRS DNEIKNHWHT ALKKRANYAS  120
NSSNDVSSNN NNRRKSNEEN QNASANNNNN MHENIALESS EWSPKESSSE ELSCIDYQQD  180
IFQEELAILE EITSGSFWTE PFEMDSKIDF VAPSIDYCGL VCPPSPFIPH EFLSSFDLDH  240
YDYNW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28141177109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045419
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-134HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360526.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX83e-53MYB14_ARATH; Transcription factor MYB14
TrEMBLM1CH290.0M1CH29_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000673220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.16e-54myb domain protein 107
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]