PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045447
Common NameLOC102604010
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 428aa    MW: 48270.8 Da    PI: 5.1556
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045447genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.18.3e-94374161373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsev 87 
                           l++lLl+cA a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r +++  +    s+ +     + +++++l  ++++
  PGSC0003DMP400045447  37 LEKLLLHCASALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASRVCPNATNLHGGSNLE----RRLMSVTELagYVDL 121
                           5799***************************************************777766655444444....33333444466**** PP

                  GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelg 173
                            P+++f++ + N+ I++a+eg+++vHi+Df+i++++QWp+L++a+a+RpegppslRi + +   ++    + + ee+g+rLa+fA+  +
  PGSC0003DMP400045447 122 IPWHRFGFCASNSVIYKAIEGQTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPQVpplLNVSSEEVGQRLANFAKFRD 210
                           **********************************************************988755558899999**************** PP

                  GRAS 174 vpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadh.nsesFle 255
                           vpfef+v+    +   l++l++++L+++ +Eal+Vn++  l +l+d+++       rd +L+ vk+l+P +v++v++++d+ ns+++  
  PGSC0003DMP400045447 211 VPFEFHVIedlnYDMFLSQLNPSTLQIRDDEALVVNCQNWLRYLHDDEQIKGAisSRDIFLDRVKDLNPCIVTIVDEDCDLgNSTTLTS 299
                           *******9766444467889*******************99999876643332447********************************* PP

                  GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                           r++ +++y +  fd+le+ lp++s++r  +E   +g +i+n++  eg++r+er e+ +k ++r+e++G+ +vp+se++ k++k+ll ++
  PGSC0003DMP400045447 300 RIATCFNYLWIPFDALETFLPKDSKQRLDYEGD-IGHKIENIIGFEGNQRIERLESCNKFSQRMENSGYMSVPFSEETIKEVKSLLDEH 387
                           *********************************.******************************************************* PP

                  GRAS 345 k.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                           + ++g++ +ee++ lvl+Wk+++ v +++W
  PGSC0003DMP400045447 388 AsGWGMK-KEEHDMLVLTWKGHNSVYATSW 416
                           *666555.45677899******99999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.9711397IPR005202Transcription factor GRAS
PfamPF035142.9E-9137416IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNFTTIPLQN PSFFNNSQSS LAGALQGCIG NLDGACLEKL LLHCASALEN NDVTLAQQVM  60
WVLNNLASSN GDPNQRLTSW FLRALISRAS RVCPNATNLH GGSNLERRLM SVTELAGYVD  120
LIPWHRFGFC ASNSVIYKAI EGQTKVHILD FSITHCMQWP TLIDAIAKRP EGPPSLRISV  180
PSWRPQVPPL LNVSSEEVGQ RLANFAKFRD VPFEFHVIED LNYDMFLSQL NPSTLQIRDD  240
EALVVNCQNW LRYLHDDEQI KGAISSRDIF LDRVKDLNPC IVTIVDEDCD LGNSTTLTSR  300
IATCFNYLWI PFDALETFLP KDSKQRLDYE GDIGHKIENI IGFEGNQRIE RLESCNKFSQ  360
RMENSGYMSV PFSEETIKEV KSLLDEHASG WGMKKEEHDM LVLTWKGHNS VYATSWVIVP  420
TTPYGHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-573841688472Protein SHORT-ROOT
5b3h_B4e-583841634418Protein SHORT-ROOT
5b3h_E4e-583841634418Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045447
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360550.10.0PREDICTED: scarecrow-like protein 32
TrEMBLM1CH560.0M1CH56_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000673600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-122GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]