PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400045450

Common Name

LOC102589608, STK

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GeBP

Protein Properties

Length: 220aa MW: 24664.2 Da PI: 9.8054

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400045450	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	68.6	1.3e-21	2	67	29	97
DUF573 29 spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +ps+d++af+ef++++++++vsksq+++K+rrLKkKf ++vk+ g+ep+f+k +d ife+sk+iWg PGSC0003DMP400045450 2 EPSADMSAFHEFIRGKLQAEVSKSQISDKVRRLKKKFLTNVKD---GEEPVFTKGQDFLIFEHSKRIWG 67 6899***********************************99...********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.5E-17	2	67	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MEPSADMSAF HEFIRGKLQA EVSKSQISDK VRRLKKKFLT NVKDGEEPVF TKGQDFLIFE 60 HSKRIWGAPG ISNGGVKDNV NNTSNGKAKK TVEVKKSSEP KKSAKVSKPK DDEKQKEEEQ 120 QVAVKEVVKE DIVKGDQQDF QSKYPRLAAS LETMSGLSTM YPNGSSLLKE NMSLIATDKA 180 KVLEEKWKKL EDDEAALMVK RLDFIAEHYR LVVDAMRGN*

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269\|PubMed:12028578}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400045450

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ314612	0.0	AJ314612.1 Solanum tuberosum mRNA for storekeeper protein (STK gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001305529.1	1e-157	STOREKEEPER protein
Swissprot	Q94IK2	1e-158	STK_SOLTU; STOREKEEPER protein
TrEMBL	M1CH59	1e-157	M1CH59_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400067363	1e-158	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2369	20	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	3e-15	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400045450
Entrez Gene	102589608

Publications ? help Back to Top
Zourelidou M,de Torres-Zabala M,Smith C,Bevan MW Storekeeper defines a new class of plant-specific DNA-binding proteins and is a putative regulator of patatin expression. Plant J., 2002. 30(4): p. 489-97 [PMID:12028578]