PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045464
Common NameLOC102578931
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 390aa    MW: 43159.6 Da    PI: 5.8516
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045464genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57393.22.7e-29147238397
                DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                           +++lw+++D+++lL+G+ ++k+ +g++p +d++af+ef+++++ ++vsksql+eK++rLKkKf ++ k    g+ep+f k ++  +fe+
  PGSC0003DMP400045464 147 PRSLWNDDDQLALLKGVAQYKTVKGMEPNADMSAFHEFIRGKLLVEVSKSQLSEKLKRLKKKFLTNAKG---GEEPVFMKGQEFLVFEH 232
                           6789************************************************************99998...***************** PP

                DUF573  92 skkiWg 97 
                           sk+iWg
  PGSC0003DMP400045464 233 SKRIWG 238
                           *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-23149238IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAPKTKSRLV DQPPSASSSE EQEEVEESQE EEEQHSGEET EEDEEPMIAP PVVKRPITQK  60
PVQTSQKPQF SSESGSENGS GSELEAKSGH SPPSPSVSDF TIKPIVSAKA SSPSKPAGKR  120
PQEAQKEKGR KKPKTAEEED KKSAATPRSL WNDDDQLALL KGVAQYKTVK GMEPNADMSA  180
FHEFIRGKLL VEVSKSQLSE KLKRLKKKFL TNAKGGEEPV FMKGQEFLVF EHSKRIWGAP  240
ETSDGVKEIV TNSTNGKAKK TVEVKKNSEP KSSAKVSKPK DDEKHKEEEN QVAVKEVVKE  300
DIVKGDPQDF QSEYPRLAAS FESMSGMFTM YPNGTSFLKE KMSLIAPDKA KLLEEKWKKL  360
EDDEAALMVK RLDLIAEHYG LVVDAMRGN*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045464
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170370.10.0PREDICTED: neurofilament medium polypeptide-like
SwissprotQ94IK20.0STK_SOLTU; STOREKEEPER protein
TrEMBLM1CH600.0M1CH60_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000673830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.14e-20DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]