PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045466
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17443 Da    PI: 8.7923
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045466genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.6e-19959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ie+ + rq  +skR+ +ilKK +EL vLCd++va+++fs+ g++  yss
  PGSC0003DMP400045466  9 KKIEDPISRQQFYSKRKDTILKKSNELAVLCDTDVALLMFSPAGQVTSYSS 59
                          689**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.708161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-23281IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-16323IPR002100Transcription factor, MADS-box
PfamPF003197.6E-191057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGRNKLVMKK IEDPISRQQF YSKRKDTILK KSNELAVLCD TDVALLMFSP AGQVTSYSSK  60
ESVEDIMVRA MNKSVNQRYY KPQVENISSV QEAEAYAQFL RSNMEQIQQS KAKLLGVQGF  120
LQRNEYPAVN TEDTAAAGKL CLLHQGSDLR EAVAC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045466
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402902e-98AC240290.1 Solanum tuberosum chromosome 7 clone RHPOTKEY032K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360575.13e-88PREDICTED: agamous-like MADS-box protein AGL66
RefseqXP_006360576.13e-88PREDICTED: agamous-like MADS-box protein AGL66
RefseqXP_006360577.13e-88PREDICTED: agamous-like MADS-box protein AGL66
TrEMBLM1CH621e-111M1CH62_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000673851e-112(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-20AGAMOUS-like 66
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]