PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045468
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 95aa    MW: 10594.2 Da    PI: 8.4771
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045468genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.11.3e-19959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ie+ + rq  +skR+ +ilKK +EL vLCd++v +++fs+ g++  yss
  PGSC0003DMP400045468  9 KKIEDPTSRQQFYSKRKDTILKKSNELAVLCDVDVGLLMFSPAGEVTSYSS 59
                          68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.427161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-24160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-23269IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-16323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-201057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MGRTKLVMKK IEDPTSRQQF YSKRKDTILK KSNELAVLCD VDVGLLMFSP AGEVTSYSSK  60
ESLEDVMLLA MNKAGELNKR SPENPNEQVL SFTH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045468
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754468e-81HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755198e-81HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360566.16e-59PREDICTED: agamous-like MADS-box protein AGL104
RefseqXP_006360568.16e-59PREDICTED: agamous-like MADS-box protein AGL104
RefseqXP_006360569.16e-59PREDICTED: agamous-like MADS-box protein AGL104
RefseqXP_006360570.16e-59PREDICTED: agamous-like MADS-box protein AGL104
RefseqXP_015170378.16e-59PREDICTED: agamous-like MADS-box protein AGL104
RefseqXP_015170379.16e-59PREDICTED: agamous-like MADS-box protein AGL104
RefseqXP_015170380.16e-59PREDICTED: agamous-like MADS-box protein AGL104
TrEMBLM1CH657e-63M1CH65_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000673931e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.16e-20AGAMOUS-like 66
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]