PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045681
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 255aa    MW: 29069.4 Da    PI: 9.0193
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045681genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.7e-141495599
                          -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                    B3  5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                                +k+g l +p  f+ ++ +g+   +++  +  + g +W +k+  ++++    +++GW eFv+++gLk gD+++F+++g++ef   v
  PGSC0003DMP400045681 14 I--QPGFKNG-LKIPIGFL-KYlKGN--DNVEHAILKRGGYKWPMKV--NGHR----FEAGWVEFVEQQGLKLGDILMFRHEGNMEF--EV 90
                          4..4556665.********.555666..567889999**********..7777....9************************99999..99 PP

                          EEE-S CS
                    B3 95 kvfrk 99
                          ++f++
  PGSC0003DMP400045681 91 SIFDS 95
                          99986 PP
2B333.85.9e-111662302088
                           HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           + f+ ++g+ + ++ +++l+de  r W+v +   + ++++ + +GW +F  +ngL++gD   F+l+++ 
  PGSC0003DMP400045681 166 RAFL-SNGLMN-RKCEMVLKDEAQRCWSVWI--GRAGRHFGILRGWTKFRAENGLRVGDAYKFELIKNG 230
                           4454.445443.4459***************..9999999999*********************99853 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-20398IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-20397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.069796IPR003340B3 DNA binding domain
CDDcd100172.46E-13894No hitNo description
SMARTSM010198.0E-151096IPR003340B3 DNA binding domain
PfamPF023624.1E-111895IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-15149238IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-14149238IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-7155244IPR003340B3 DNA binding domain
CDDcd100175.90E-9161239No hitNo description
PfamPF023623.8E-9166231IPR003340B3 DNA binding domain
PROSITE profilePS5086310.729179240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKIPPKKPHF FKPIQPGFKN GLKIPIGFLK YLKGNDNVEH AILKRGGYKW PMKVNGHRFE  60
AGWVEFVEQQ GLKLGDILMF RHEGNMEFEV SIFDSTHCDR DYVEYMEEGG GGGGGDHTSE  120
EKFKFKDIMK KPSNMSLLNA QVVTSTSGDD HHPSFSSTVK PYCFTRAFLS NGLMNRKCEM  180
VLKDEAQRCW SVWIGRAGRH FGILRGWTKF RAENGLRVGD AYKFELIKNG EMPIAQFHCK  240
CSFSSNVVMY FCQD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045681
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-127HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801949.11e-108PREDICTED: B3 domain-containing protein REM14-like
RefseqXP_016464850.11e-108PREDICTED: B3 domain-containing protein REM14-like
TrEMBLM1CHN80.0M1CHN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000676640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-28B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]