PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400045708

Common Name

LOC102598791

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 262aa MW: 30348.6 Da PI: 8.3081

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400045708	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.3	3.3e-45	6	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 pGfrF Pt+eel+++yL+kk+egk+ el++vi+ v iy+++Pw+Lpk + +++++w+fF++r++++a+g r+ r+t+ gyWka PGSC0003DMP400045708 6 SPGFRFYPTEEELISFYLHKKLEGKRPELDRVIPVVTIYDFDPWHLPKfhgelC-MGDTEQWFFFVPRQEREARGGRPCRTTNCGYWKA 93 69*************************999***********6566532.34677************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+ v+s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ PGSC0003DMP400045708 94 TGSPSYVYSSNSKVIGVKKSMVFYKGKAPTGKKTKWKMNEYRA 136 ***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-49	5	160	IPR003441	NAC domain
PROSITE profile	PS51005	48.008	5	162	IPR003441	NAC domain
Pfam	PF02365	1.9E-23	7	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MVEIISPGFR FYPTEEELIS FYLHKKLEGK RPELDRVIPV VTIYDFDPWH LPKFHGELCM 60 GDTEQWFFFV PRQEREARGG RPCRTTNCGY WKATGSPSYV YSSNSKVIGV KKSMVFYKGK 120 APTGKKTKWK MNEYRAIEEE VNSTISIPKL RHEMSLCRIY VISGSFRAFD RRPIATITRE 180 PSKSTINQGG ISMENVTKME AISSPDESLA MEEQDYVNLH HNDQIPIINQ EININSHNNK 240 RVKSNLHDET LISGWEQFNW M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-34	5	160	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-34	5	160	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-34	5	160	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-34	5	160	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-34	5	160	20	166	NAC domain-containing protein 19
3swm_B	2e-34	5	160	20	166	NAC domain-containing protein 19
3swm_C	2e-34	5	160	20	166	NAC domain-containing protein 19
3swm_D	2e-34	5	160	20	166	NAC domain-containing protein 19
3swp_A	2e-34	5	160	20	166	NAC domain-containing protein 19
3swp_B	2e-34	5	160	20	166	NAC domain-containing protein 19
3swp_C	2e-34	5	160	20	166	NAC domain-containing protein 19
3swp_D	2e-34	5	160	20	166	NAC domain-containing protein 19
4dul_A	2e-34	5	160	17	163	NAC domain-containing protein 19
4dul_B	2e-34	5	160	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400045708

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-161	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362874.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	2e-81	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	M1CHQ7	0.0	M1CHQ7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400067707	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	9e-84	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400045708
Entrez Gene	102598791

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]