PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046170
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 219aa    MW: 24635.7 Da    PI: 8.8061
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046170genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.36.9e-31341642109
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................... 65 
                            g+kdrhsk+ T +g RdRRvRls+++a +++dLqd+LG+d++sk ++WLl++ak++i++l+ +                         
  PGSC0003DMP400046170  34 FGGKDRHSKVLTVKGVRDRRVRLSVPTALQLYDLQDKLGLDQPSKVVDWLLNEAKHEIDQLPPLqmppirdqtglpltglrketmvvsd 122
                           689*************************************************************7777766666666666555554332 PP

                   TCP  66 .....ssssaseceaesssssasnsssgkaaksaakskksqksaasaln 109
                                        +a +   ++++++++++++++    ++++s++s+++
  PGSC0003DMP400046170 123 edtvkL-------DARNLDLKDNSNNNNNSNSFSFGLYQNNHSSQSVHS 164
                           222210.......222222222222222333333344444444443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-3036147IPR005333Transcription factor, TCP
PROSITE profilePS5136929.1233694IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MITREVDTSD NKIPKKSSWT SFKDPRIVRV SRAFGGKDRH SKVLTVKGVR DRRVRLSVPT  60
ALQLYDLQDK LGLDQPSKVV DWLLNEAKHE IDQLPPLQMP PIRDQTGLPL TGLRKETMVV  120
SDEDTVKLDA RNLDLKDNSN NNNNSNSFSF GLYQNNHSSQ SVHSGSHHGV AVQHEYEEIQ  180
NFNVMAALPS TIYNMPLSSQ VLVYPPAGLS QYFFNPHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-194195155Putative transcription factor PCF6
5zkt_B4e-194195155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2468131e-157AC246813.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-33h20 map 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365661.11e-161PREDICTED: transcription factor TCP13-like
TrEMBLM1CIV81e-160M1CIV8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000683321e-161(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-42plastid transcription factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]