PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046189
Common NameLOC102583257
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 132aa    MW: 14964.3 Da    PI: 8.6278
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046189genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.83.7e-15754350
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          ++ k+n+  ++  R++ i  K  EL +LCd++v+ +i++++g+l++++
  PGSC0003DMP400046189  7 SKKKTNNPKSYQVRKECIKRKSMELATLCDIKVCTVIIGPNGELQTWP 54
                          7899*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.741853IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-15879IPR002100Transcription factor, MADS-box
PfamPF003192.1E-10953IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MADEDQSKKK TNNPKSYQVR KECIKRKSME LATLCDIKVC TVIIGPNGEL QTWPDNLDAC  60
KEVLDLYSQN LKPEKKHKES STPVPEPEEE QGEKNLLTLV ESKLAAVNKR IRFLENKNVV  120
VVDKGKRKII E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046189
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2470631e-124AC247063.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone hba-34c20 map 11, complete sequence.
GenBankAC2536231e-124AC253623.2 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-40f16 map 11, complete sequence.
GenBankHG9755231e-124HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361194.11e-90PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLM1CIX63e-89M1CIX6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000683564e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.11e-12AGAMOUS-like 98
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]