PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046284
Common NameLOC102604336
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 328aa    MW: 36713.2 Da    PI: 8.7877
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046284genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-3164117255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           +rlrWtpeLH rFv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ++R+
  PGSC0003DMP400046284  64 ARLRWTPELHLRFVHAVERLGGQDRATPKLVLQMMNIKGLSIAHVKSHLQMFRS 117
                           69***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.66160120IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2960118IPR009057Homeodomain-like
SuperFamilySSF466895.91E-1563118IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-2264119IPR006447Myb domain, plants
PfamPF002491.1E-965115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MLEDSGETGC NSKTSSNFEK NEDEVLEENA SSKFKDGGSS SESTLEESEK IKPCVRPYVR  60
SKMARLRWTP ELHLRFVHAV ERLGGQDRAT PKLVLQMMNI KGLSIAHVKS HLQMFRSKKI  120
DDQSQGIGHH HKLFMEGGDP NIFNMIQFPR FPAYHQRLNS TFRYGDASWN CHGNWMPSNT  180
MGQRIPSFIN ERSNLQRNEI KDVMGSSIGS PSGELTRLFH IASKAQARAF VGNGITSPPN  240
LERAITPLKR KVSYNDQVDL NLYLGVKPRN EVTPNLDDND NDNISSLSLS LSSPLSYSRA  300
TRFIEDANID GKTENARRGA STLDLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1864119257Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1864119257Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1864119257Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1864119257Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046284
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359562.20.0PREDICTED: uncharacterized protein LOC102604336
TrEMBLM1CJ600.0M1CJ60_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000685080.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43822141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-51G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]