PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046480
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 365aa    MW: 41091.4 Da    PI: 8.7915
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046480genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-0714431445
                          HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwq 45
                          +a k +G++ W+ Ia+ +  gRt++ +k+r+ 
  PGSC0003DMP400046480 14 QAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFT 43
                          68899****.*********.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.013150IPR017930Myb domain
CDDcd001671.53E-51445No hitNo description
PfamPF002491.6E-51443IPR001005SANT/Myb domain
SuperFamilySSF466892.65E-81454IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-91449IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MYISDRKRLI ARMQAQKIFG NRWTEIAKVV SGRTDNAVKN RFTTICKKKA KHAAMAEENR  60
VTFSNKLDTD RICDVSAPIK KLRRSHTIES LVDDCPNNNQ PLRHPFAVLA QNVNNLKDTY  120
ENGTFLKKND RKINVLMQQE ELLNSLTLKV DSKNTNQSLE NAWKVVDDFL HQMKEGDMLK  180
FRHTEMNSGH NIHKNLITNS SSNERNQPSK RQLALSQESG GSSEYNTGST LMSHALSSKT  240
KECQVKTCAR DQEIQSGLQK SQIGDQTGVH ELENGIFCDL SFPHDTPPVC DEMKDNDVSA  300
TAECEYPSPL QVTPQFRSLA EAIPSPKFSE SERQFLLKTL GVESTSPHRT TKPPSCKRAL  360
LQSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754436e-85HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162729.10.0PREDICTED: transcription factor RAX2-like
TrEMBLM1CJI10.0M1CJI1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000687980.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.23e-78MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]