PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046613
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 192aa    MW: 22335.8 Da    PI: 10.0774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046613genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.83.5e-0971378128
                   NAM   8 hPtdeelvveyLkkkvegkkleleevikev.d...iykvePwdLpkkvkaeekew...yfFskrdkkyatgkrknratksgyWkatgkd 89 
                           hP d+e++ + L k v gk+++ ++++ +v d   i  + P+++ +++k++++++     F +r++    +   ++  + g+Wk+t k 
  PGSC0003DMP400046613   7 HPMDKEMM-KNLVKYVIGKPFPRKHTVMDVdDvygIRVFSPSQILESTKGTNNNTrllITFQNRENC---KIFDSK-EAPGFWKSTPKL 90 
                           8******9.5688999999977766555553422266779***975444444433112444444333...333444.356********* PP

                   NAM  90 kevlskkgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                           k +++++++++g  k+  +y        ++++++ +k++W + ey l
  PGSC0003DMP400046613  91 KGIFDANKRHIGNIKIGWYYyynvddgrDKSSSRLRKSEWQIREYYL 137
                           ******999**9999988877888855445566667*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.9181159IPR003441NAC domain
SuperFamilySSF1019413.53E-97151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGKSNDHPMD KEMMKNLVKY VIGKPFPRKH TVMDVDDVYG IRVFSPSQIL ESTKGTNNNT  60
RLLITFQNRE NCKIFDSKEA PGFWKSTPKL KGIFDANKRH IGNIKIGWYY YYNVDDGRDK  120
SSSRLRKSEW QIREYYLAPT YLPQSKVERK NVLLTMMIKA KAANNNDKSD DKMQIVLDKQ  180
EIMQSLQCLQ L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046613
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774642.11e-112uncharacterized protein LOC114078274
TrEMBLM1CJT31e-141M1CJT3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000690201e-141(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14078510
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]