PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046791
Common NameLOC102593241
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family BBR-BPC
Protein Properties Length: 312aa    MW: 34819.8 Da    PI: 10.0198
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046791genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind320.93.9e-9813111301
             GAGA_bind   1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerd...........................maf 60 
                           md +g ++ rn++y+ep+ +  k +lglqlmss++e+    r+ + + +++++++ + d                           m++
  PGSC0003DMP400046791   1 MDGNGGMNiRNWSYFEPTpTVPKGHLGLQLMSSMNEKPPHFRNIHDNHHQQQQTH-QPDhptvmastnggafhhhrvcglsespmpMEY 88 
                           999999999********9677799***********99999988888555555544.44458889999999999999************* PP

             GAGA_bind  61 lqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkk 149
                            +rd+++++      + ++k+l++l +++       +g++ l++t+s++s+q++++p+l +  +         ++++ ++++++   +k
  PGSC0003DMP400046791  89 -MRDSWVNQ-----KDYREKYLNVLSANHP----YLPGYGFLPETSSAQSMQMHQQPNLVKVETA------PLVEEVCQERDNIGGLAK 161
                           .********.....5667899999997775....56899**************777776554433......234455555555555555 PP

             GAGA_bind 150 kkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttt 238
                           k++  ++++ k++k kk+kk ++++k++++++   +r++a++ks ++ +ng+++D+s +P+P+CsCtGa +qCY+WG+GGWqSaCCtt+
  PGSC0003DMP400046791 162 KREAGQSQVLKSPKPKKAKKATRAPKDESTPSL--PRARAPRKSAEVIINGINMDISVIPIPICSCTGAAQQCYRWGCGGWQSACCTTN 248
                           555666777888888888887778866666555..79**************************************************** PP

             GAGA_bind 239 iSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           +S yPLP++ krrg+RiagrKmS gafkk+LekLa+eGy++snp+DLk hWA+HGtnkfv ir
  PGSC0003DMP400046791 249 LSSYPLPMNVKRRGSRIAGRKMSLGAFKKVLEKLASEGYNFSNPIDLKPHWARHGTNKFVIIR 311
                           *************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.4E-1061311IPR010409GAGA-binding transcriptional activator
SMARTSM012262.3E-1441311IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDGNGGMNIR NWSYFEPTPT VPKGHLGLQL MSSMNEKPPH FRNIHDNHHQ QQQTHQPDHP  60
TVMASTNGGA FHHHRVCGLS ESPMPMEYMR DSWVNQKDYR EKYLNVLSAN HPYLPGYGFL  120
PETSSAQSMQ MHQQPNLVKV ETAPLVEEVC QERDNIGGLA KKREAGQSQV LKSPKPKKAK  180
KATRAPKDES TPSLPRARAP RKSAEVIING INMDISVIPI PICSCTGAAQ QCYRWGCGGW  240
QSACCTTNLS SYPLPMNVKR RGSRIAGRKM SLGAFKKVLE KLASEGYNFS NPIDLKPHWA  300
RHGTNKFVII R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046791
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347363.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
TrEMBLM1CK920.0M1CK92_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000693040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100482026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.35e-83basic pentacysteine 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]