PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046911
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family FAR1
Protein Properties Length: 218aa    MW: 24863 Da    PI: 9.8917
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046911genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.13.8e-2051136290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C     +++     + ++++r  +r gC+a++ vk+ek g+w+v k++ +HnH+l+
  PGSC0003DMP400046911  51 YYDEYAGMTGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRPA---SLANQKRDRQRDGCTAMILVKREKPGTWVVRKFVRDHNHPLV 136
                           8*********************************8655555554...458999999*******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-1851136IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDVQVLEDNG ARRVESSAEG QVSTSEADRS HRTQEPNEGM TFESEEAARA YYDEYAGMTG  60
FITRVLSSRK SERDGSIISR GLGCRGIPDN QRPASLANQK RDRQRDGCTA MILVKREKPG  120
TWVVRKFVRD HNHPLVMSPS KRRPTFDEKD KRIQELTAEL RIKKRLTAAY REHLLSLMKD  180
VESHSEHLST KVQAVQSILI ELEAKRQELS NHSRHHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046911
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347300.11e-161PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
TrEMBLM1CKJ41e-159M1CKJ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000694931e-160(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130991718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.16e-45FAR1 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]