PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400046913

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 196aa MW: 22073.8 Da PI: 5.186

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400046913	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.8	1e-29	87	174	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+ PGSC0003DMP400046913 87 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHSHPLC 173 ****************************************9988..9*************************************9 PP FAR1 91 p 91 p PGSC0003DMP400046913 174 P 174 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-27	87	174	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MDFVVDDHVS GDEEEGTVVE LRTVDENLIG GSSSEEALHQ VHDVKVDEDL PEREDLLLEE 60 AQSLDNSTSD EPFVGLEFES EAAAHAFYNA YATRVGFIIR VSKLSRSRRD GSAIGRALVC 120 NKEGFRMPDK REKIVRQRAE TRVGCRAMIL VRKISSGKWV VTKFVKEHSH PLCPGKGRRD 180 LIYDQYPVSF LPYLY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400046913

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015164249.1	1e-135	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	1e-26	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	M1CKJ6	1e-141	M1CKJ6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400069495	1e-135	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-59	FAR1 family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400046913

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]