PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046935
Common NameLOC102580730
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WOX
Protein Properties Length: 246aa    MW: 26708.6 Da    PI: 5.7223
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046935genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.43.9e-161979257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          r+R+++++eq+ +Le+ F++   +p+++e  ++ k l     + +++V++WFqNrR + ++
  PGSC0003DMP400046935 19 RSRWNPKPEQIVILESIFNSgMVNPQKDETVRIRKMLeqfgAVGDANVFYWFQNRRSRSRR 79
                          89*****************99*************************************997 PP
2Wus_type_Homeobox108.34.6e-351881265
     Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                          +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q
  PGSC0003DMP400046935 18 VRSRWNPKPEQIVILESIFNSGMVNPQKDETVRIRKMLEQFGAVGDANVFYWFQNRRSRSRRRQ 81
                          689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-141486IPR009057Homeodomain-like
PROSITE profilePS5007111.3861580IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.8E-91684IPR009057Homeodomain-like
SMARTSM003891.6E-51784IPR001356Homeobox domain
PfamPF000467.4E-141979IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDDDSSSSNQ SCERNETVRS RWNPKPEQIV ILESIFNSGM VNPQKDETVR IRKMLEQFGA  60
VGDANVFYWF QNRRSRSRRR QRQIQASLSA ASNSNEEQSA RSSSSGAIQF QTNFVPSSVS  120
SSLGGVVGNA NDGLFLFSGP MEIDQNSSIT SILCSPTDNS NLNCSSSGFI TVFINGVATQ  180
VPRGPLDMKA MFGPEDLVLY HSSGVPLPVN ENGFVVQGLQ HGESYFLVSS HQLPQVAGGR  240
VSNMT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164268.11e-180PREDICTED: WUSCHEL-related homeobox 11-like isoform X1
SwissprotQ6X7J38e-63WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLM1CKL81e-178M1CKL8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000695291e-179(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61662231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.22e-32WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  3. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  4. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  5. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]