PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400047030

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 176aa MW: 19246.6 Da PI: 6.7769

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400047030	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.3	5.4e-43	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC ++C++ap+fp e+p+kfanvhk+FGasnv+kll+++ +++reda+++l+yeAear+rdPvyG+v+ i+ lq+q+e+ PGSC0003DMP400047030 10 PCAACKFLRRKCLPGCIFAPHFPPEEPHKFANVHKIFGASNVTKLLNEVLPDQREDAVNTLAYEAEARVRDPVYGCVSAITFLQRQVER 98 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l++el+++k+ PGSC0003DMP400047030 99 LEKELDAAKAD 109 ***999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.097	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-42	10	107	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MASSSCYNSP CAACKFLRRK CLPGCIFAPH FPPEEPHKFA NVHKIFGASN VTKLLNEVLP 60 DQREDAVNTL AYEAEARVRD PVYGCVSAIT FLQRQVERLE KELDAAKADL MRYASNCNDV 120 SPPLIGSHHH EEENIGSTLH NMAISRRMGY DHHGGGGGSY FPWNDQNTSG GGGNI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-61	9	114	10	115	LOB family transfactor Ramosa2.1
5ly0_B	5e-61	9	114	10	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400047030

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-179	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006347489.2	1e-131	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	3e-69	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	M1CKU6	1e-129	M1CKU6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400069646	1e-130	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	3e-70	LBD family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400047030

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]