PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047119
Common NameLOC102583764
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 249aa    MW: 28943.6 Da    PI: 9.0322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047119genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-072565341
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqck 41
                           WT+eE +++  a + +      +W+++a+ ++ g++  +++
  PGSC0003DMP400047119 25 EWTKEENKRFESALAIYDETtpnRWSKVAEIIP-GKSVLDVI 65
                          6*****************99*************.**988876 PP
2Myb_DNA-binding41.53.2e-13123167347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ +++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
  PGSC0003DMP400047119 123 PWTEEEHRRFLMGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 167
                           8*****************************789***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-41863IPR009057Homeodomain-like
PROSITE profilePS512937.2232175IPR017884SANT domain
SMARTSM007173.5E-92274IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-112478IPR009057Homeodomain-like
PfamPF002492.5E-62568IPR001005SANT/Myb domain
CDDcd001674.84E-72572No hitNo description
PROSITE profilePS5129420.287116172IPR017930Myb domain
SuperFamilySSF466891.65E-16117171IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-18119171IPR006447Myb domain, plants
SMARTSM007172.7E-11120170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-11122167IPR009057Homeodomain-like
PfamPF002492.1E-11123167IPR001005SANT/Myb domain
CDDcd001678.15E-9123167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
METLYPTSFV PNSNWIMQQS KSNTEWTKEE NKRFESALAI YDETTPNRWS KVAEIIPGKS  60
VLDVIMQYKE LVADVSDIEA GLPPNTKRGF TSSFALEFVD HCKIQTFSKR GKSYDHKRKR  120
GVPWTEEEHR RFLMGLEKYG KGDWRNISRN FVISKTPTQV ASHAQKYYLR QLSREKERKR  180
PSIHDITTVH LTNDEFLNNN NNNNNKKSMC EERLYMSSLH RSTSTTDVLI GCWNNSIDED  240
LMAFGQFV*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047119
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-177HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755171e-177HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355655.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_015167947.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_015167948.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-78DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM1CL290.0M1CL29_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000697530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-75Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]