PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047197
Common NameLOC102588713
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 554aa    MW: 63804 Da    PI: 5.7719
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047197genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS287.53.6e-881755511374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....f 84 
                           lve Ll+ Ae v ++++ +a+++L++  +l+s++g+++qRl+ yf +AL++r+ r ++   +k +++++   ++ +++l+ l+l     
  PGSC0003DMP400047197 175 LVENLLASAEKVGQKQFDRARRILNECDKLCSNTGNAIQRLVYYFSQALHERIDReTGRDSSKGIEMKRLV-QHIEHSLMNLNLtmiaA 262
                           5789***************************************************6677777777777665.34444444443345568 PP

                  GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakf 168
                           ++  P+ +++++ta qaI + v ++++vHiiD+ i+ G+QW  L+qaL + +     e+  +l+iT++     + ++++eet++rL +f
  PGSC0003DMP400047197 263 HQNIPLSQVTQFTAVQAIIDHVGESKKVHIIDLKIGSGMQWTILMQALVTHQfesesESIKHLKITALCT---KLRHKIEETRQRLMDF 348
                           8999*********************************************999887666678*******99...57999*********** PP

                  GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                           A++l++pf+fn++++k++++l+ e+++++++E++a+  ++ l+ +l+++ +l+s    +++++k+++P+ ++v+e ea+hns+ F++rf
  PGSC0003DMP400047197 349 AKSLNLPFSFNIVMVKDMTELKQEDFEIDNEESIAIFAQYILMWMLARPDKLDS----LMRVIKGINPRAMIVIEVEANHNSPVFVDRF 433
                           **********************************************77777777....******************************* PP

                  GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
                           +eal +y a+fdsle  + +++++r+  E e l++ i+++va+eg+er+ rh ++  Wr+ + + G+++++ls +   qa+l+l++++ 
  PGSC0003DMP400047197 434 VEALFFYGAFFDSLEDCMKNDERNRTATELEHLSQGIRSIVATEGEERTIRHVKVDVWRAFFARYGMEEMELSMSSLYQANLVLKNFAc 522
                           ****************************************************************************************9 PP

                  GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           +   ++e ++++l++gWk+ pL s+SaW+
  PGSC0003DMP400047197 523 GSCCTLEMNKNCLLIGWKGTPLNSLSAWK 551
                           999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.932149530IPR005202Transcription factor GRAS
PfamPF035141.2E-85175551IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MFNFDQVSNK FKELNSSESN EMNLLNFDFV SVDDWDFNVE EIEPLMNLTQ PQKLAQREND  60
CTSLIKSSSS RLDRPMWDFS HQQSQLPSSF KILKDYDTTR LIKRSKTEQN IIISNECIKE  120
HNGSMLSTDE ILRLGAEKFI QSFTIRGDQE PYMFSHPFAS SFLGLPEEDT RNVALVENLL  180
ASAEKVGQKQ FDRARRILNE CDKLCSNTGN AIQRLVYYFS QALHERIDRE TGRDSSKGIE  240
MKRLVQHIEH SLMNLNLTMI AAHQNIPLSQ VTQFTAVQAI IDHVGESKKV HIIDLKIGSG  300
MQWTILMQAL VTHQFESESE SIKHLKITAL CTKLRHKIEE TRQRLMDFAK SLNLPFSFNI  360
VMVKDMTELK QEDFEIDNEE SIAIFAQYIL MWMLARPDKL DSLMRVIKGI NPRAMIVIEV  420
EANHNSPVFV DRFVEALFFY GAFFDSLEDC MKNDERNRTA TELEHLSQGI RSIVATEGEE  480
RTIRHVKVDV WRAFFARYGM EEMELSMSSL YQANLVLKNF ACGSCCTLEM NKNCLLIGWK  540
GTPLNSLSAW KFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-4020555133375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047197
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355756.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLM1CL900.0M1CL90_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000698450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-60RGA-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]