PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047280
Common NameLOC102587080
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 230aa    MW: 27300.9 Da    PI: 9.2027
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047280genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.8e-191360148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT eEd+ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  PGSC0003DMP400047280 13 KGPWTVEEDKLLIEYVNLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 60
                          79********************************************97 PP
2Myb_DNA-binding47.44.3e-1566109146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg  T+ E+ +++++++ +G++ W+tIar ++ gRt++++k++w++
  PGSC0003DMP400047280  66 RGQITPYEERIILELHAIWGNR-WSTIARSLP-GRTDNEIKNYWRT 109
                           6788999***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.079864IPR017930Myb domain
SuperFamilySSF466891.65E-3011107IPR009057Homeodomain-like
SMARTSM007177.1E-171262IPR001005SANT/Myb domain
PfamPF002493.6E-181360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-241467IPR009057Homeodomain-like
CDDcd001671.60E-111560No hitNo description
SMARTSM007173.1E-1365113IPR001005SANT/Myb domain
PROSITE profilePS5129417.61965115IPR017930Myb domain
PfamPF002498.0E-1366109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2368115IPR009057Homeodomain-like
CDDcd001671.19E-870110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRWGIIEEE WRKGPWTVEE DKLLIEYVNL HGEGRWNSVA RLAGLKRNGK SCRLRWVNYL  60
RPDLKRGQIT PYEERIILEL HAIWGNRWST IARSLPGRTD NEIKNYWRTN FKKKFKKSST  120
ENSEKTKVHF LKRKQFQQQQ LLNSQIDMKK IMSLFEENEN KVPSHVPKQE DMTILYQNNT  180
FHEQEQGGFF YSMINGYANY VPVPEASSND EDIMWDIGLW NLDDFNVNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28131157108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-124HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355751.11e-170PREDICTED: transcription factor MYB24-like
TrEMBLM1CLG81e-169M1CLG8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000699551e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-70myb domain protein 305
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]