PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047344
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 257aa    MW: 29018.1 Da    PI: 8.8046
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047344genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012195217223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp C+ +Fs+   L  H ++ H
  PGSC0003DMP400047344 195 PCPQCHLRFSTVRALIDHVQKvH 217
                           5*****************99988 PP
2zf-C2H215.64.7e-05229251223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp C+k F+++  L+ H  + H
  PGSC0003DMP400047344 229 VCPRCSKGFRDPVALVEHVEReH 251
                           7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.101.6E-1069128IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.35E-972128No hitNo description
SMARTSM001540.00780121IPR000058Zinc finger, AN1-type
PfamPF014283.3E-880120IPR000058Zinc finger, AN1-type
SMARTSM003550.036194217IPR015880Zinc finger, C2H2-like
PfamPF138949.0E-4195217No hitNo description
PROSITE patternPS000280196217IPR007087Zinc finger, C2H2
SMARTSM003557.1228251IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974228256IPR007087Zinc finger, C2H2
PROSITE patternPS000280230251IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLNVLTYNTS LQVYCLDHRS YIRHQCPTAN KNNVTVVICP LCAKGVRLNP VEDPNITWES  60
HVNTECDPSN YEKATKKKKC PVPRCKELLT FSNTIKCRDC TVDHCLKHRF GPDHSCPGPK  120
KPESTFQFMN FLNGSKEESK KAQPTTTSRW TTSLLKVVTS VKEKFNSEFN QPQQTGQSSR  180
ATNHSVTNNS SQVEPCPQCH LRFSTVRALI DHVQKVHEKN GVMNMTIDVC PRCSKGFRDP  240
VALVEHVERE HKGSSM*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047344
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350207.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ8VZ421e-100SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM1CLM60.0M1CLM6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000700440.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]