PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047599
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 95aa    MW: 10533 Da    PI: 3.9512
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047599genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26041.24.8e-1314161101
                DUF260  61 lvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                           +vyeA+ar+rdPvyG++g i +lq+q++ l+a+la++++e+
  PGSC0003DMP400047599   1 MVYEANARLRDPVYGCAGSICQLQKQVSDLQAQLAKAQAEI 41 
                           69**********************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.476141IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-11138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MVYEANARLR DPVYGCAGSI CQLQKQVSDL QAQLAKAQAE IVNMQCQQAN FMALICMEMG  60
QSTPQTISPP QQSLDNFPMN YLDDNIGSWE TLWT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047599
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1422101e-151AC142210.1 Solanum demissum chromosome 11 clone PGEC589, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340400.13e-65PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR09e-23LBD1_ARATH; LOB domain-containing protein 1
TrEMBLM1CM432e-63M1CM43_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000704053e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-23LOB domain-containing protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]