PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047629
Common NameLOC102591286
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YC
Protein Properties Length: 294aa    MW: 32276.8 Da    PI: 4.7302
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047629genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC59.95.3e-196861898
                 NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                          ++++P arikki++adedv +i+  +P l+ska elf+ +l  r++  + ++  +t++   ++ ++++ ++fdfl d+v r
  PGSC0003DMP400047629  6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHLKHCIQSFNVFDFLKDVVSR 86
                          5789**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-25372IPR009072Histone-fold
SuperFamilySSF471137.11E-20388IPR009072Histone-fold
PfamPF008089.4E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRKRLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKKGAK  60
TMNSFHLKHC IQSFNVFDFL KDVVSRVPDL GGSDASAESA TKRRKVAEED DHDSDDDAKR  120
NHANETANNS GTGRGRGRGR GRGRGRGARA VEKGDSNVHS EKLEDPAADV SHQKDDEKQK  180
QNDERMVDYV AEPAVDSKNI SAAKCSPEVV APARNFDLNI DLNESVESTP MPSEVPLSST  240
ATPAPAPPPP EVKHEEIPGW SLSEMEKMAI DPIQLANLNQ GLDEEEEDYD EEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A8e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135145RGRGRGRGRGR
2137146RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047629
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-160HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340356.10.0PREDICTED: dr1-associated corepressor isoform X1
TrEMBLM1CM700.0M1CM70_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000704500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.19e-57NF-YC family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]