PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047957
Common NameLOC107062572
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 261aa    MW: 29823.5 Da    PI: 7.5479
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047957genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151966148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W+++Ed++l+d+++++ + +W+  ++  g+ Rt+k+c++rw +yl
  PGSC0003DMP400047957 19 KGAWSPQEDKKLIDYIAKYRNWNWSQMPKFAGLSRTGKSCRLRWTNYL 66
                          79********************************************97 PP
2Myb_DNA-binding44.14.9e-1472117148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+++ eE +  ++  + lG++ W++Ia++++ gRt++++k++++++l
  PGSC0003DMP400047957  72 RGPFSLEETQTVIRMYQSLGSR-WSAIAKELP-GRTDNEIKNFYHTHL 117
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.2351470IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-211769IPR009057Homeodomain-like
SuperFamilySSF466897.35E-2718113IPR009057Homeodomain-like
SMARTSM007173.2E-121868IPR001005SANT/Myb domain
PfamPF002491.8E-141966IPR001005SANT/Myb domain
CDDcd001677.77E-92166No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2370121IPR009057Homeodomain-like
PROSITE profilePS5129414.70671121IPR017930Myb domain
SMARTSM007179.6E-1471119IPR001005SANT/Myb domain
PfamPF002497.4E-1372117IPR001005SANT/Myb domain
CDDcd001674.59E-974117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGEVVFQLQR GKNMDCVKKG AWSPQEDKKL IDYIAKYRNW NWSQMPKFAG LSRTGKSCRL  60
RWTNYLRPDL KRGPFSLEET QTVIRMYQSL GSRWSAIAKE LPGRTDNEIK NFYHTHLKKH  120
LGGTKVEVKH KARSKKVEKV KQIEMSTQKK PLITTCPNIE GPNDQSLDFT NSSSSSSYIT  180
FDENYEILET SNQDNDVTSI VNQVYDDENI VILESNPDST TTSSSSVDLN VKDFMDVSVH  240
SSNVVDFWLE LYMAAENLNT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22191197106B-MYB
1h8a_C6e-221911927126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047957
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-128HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168845.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9S9Z25e-46MYB93_ARATH; Transcription factor MYB93
TrEMBLM1CMY60.0M1CMY6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000709120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-48myb domain protein 14
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]