PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047973
Common NameLOC107062571
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 224aa    MW: 26024.5 Da    PI: 8.0161
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047973genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY681.4e-2194155259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK++ +s++pr YYrC+++   +C ++k+ver +e +p +  +tY g+H ++
  PGSC0003DMP400047973  94 EDGHAWRKYGQKVILNSKYPRCYYRCSHKydqECYATKQVERIKEeEPIIYRTTYFGHHVCK 155
                           7***************************99999*********8761566789*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-2383157IPR003657WRKY domain
SuperFamilySSF1182903.14E-2287157IPR003657WRKY domain
PROSITE profilePS5081118.46488157IPR003657WRKY domain
SMARTSM007745.6E-3393156IPR003657WRKY domain
PfamPF031064.4E-2294155IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVKEHLEQGK EFAVQLQSLL QQPLAHHNKS VSPHDLILKI LTCFTKALSS VTGSKDFSSE  60
FRLKDKQIVK NRRGCYGRKR KALDSWTRET TITEDGHAWR KYGQKVILNS KYPRCYYRCS  120
HKYDQECYAT KQVERIKEEE PIIYRTTYFG HHVCKRPQIM ITTSREESKL QHSCDKSCAL  180
DWQDLIPDFS LEGVVSSYND LNGLDMDNVG EFGDFHFEAL EFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-2094155969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047973
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168844.11e-169PREDICTED: probable WRKY transcription factor 70
TrEMBLM1CMZ71e-167M1CMZ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000709391e-168(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-36WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]