PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048106
Common NameLOC107058871
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 135aa    MW: 15074.8 Da    PI: 4.6556
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048106genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260453.1e-145604499
                DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
                          ++ +++p ++reda+ s+vyeA ar+rdPvyG+vg+i++lq+++ +l+++l+++ +
  PGSC0003DMP400048106  5 NFQQEIPMDNREDAVISMVYEATARLRDPVYGSVGIISALQKHIFHLQSNLNEASA 60
                          6779999******************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.429162IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-13658IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVDINFQQEI PMDNREDAVI SMVYEATARL RDPVYGSVGI ISALQKHIFH LQSNLNEASA  60
EAMSLRTQLS NASTSLPSSL LEVSPFTPVN HEFHHSQKSS QQNAYSNNDL HLLLPEAADY  120
CFQETDQVLR PLPY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-178HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160565.12e-95PREDICTED: LOB domain-containing protein 1-like
TrEMBLM1CN845e-94M1CN84_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000711329e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131471419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-18LOB domain-containing protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]