PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048214
Common NameLOC102605444
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 225aa    MW: 25544.1 Da    PI: 8.3985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048214genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.4e-144692354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          r+h+e+E+rRRdriN  +++Lr+l+P++     +K++Ka+ L  +v+++k+L
  PGSC0003DMP400048214 46 RSHSEAEKRRRDRINAQLSTLRKLIPTS-----EKMDKAALLGSVVDHVKDL 92
                          78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1440100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-114193No hitNo description
PROSITE profilePS5088816.3554392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-124692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-154695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-134998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048739.80E-6131182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MENSFCSEYW PENQDSVYLL PQVPCYFPQI QCSHESFQER RESASRSHSE AEKRRRDRIN  60
AQLSTLRKLI PTSEKMDKAA LLGSVVDHVK DLKGKTAEIS KVLNTPTDTD EVTIEHLNEE  120
EENKGCLLKA SFCCDDRPEL FSELQRGIKN LKLRVMGADI TSLGGRIKGV FMLCPNENSA  180
NDVCMNSLKR SLRVVLSRIA ISPSTSNYRI KSKRQRFFLP AHFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215KSKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048214
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356465.11e-167PREDICTED: transcription factor bHLH51-like
SwissprotQ9XEF04e-46BH051_ARATH; Transcription factor bHLH51
TrEMBLM1CNH41e-166M1CNH4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000712931e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.16e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]