PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048335
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 217aa    MW: 24475.6 Da    PI: 9.901
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048335genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-134893247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +rWT++E++ ++++   +G+g+W+ Ia+ +  +Rt  q+ s+ qky
  PGSC0003DMP400048335 48 NRWTEDEQKAFLKGLDFHGKGSWTNIAKDFVPTRTSTQVASHAQKY 93
                          69*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7864298IPR017930Myb domain
SuperFamilySSF466891.44E-144597IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-134596IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.6E-114594IPR009057Homeodomain-like
SMARTSM007173.9E-104696IPR001005SANT/Myb domain
PfamPF002491.8E-114893IPR001005SANT/Myb domain
CDDcd001672.26E-94994No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDRNCSENGK SIKLFGFEIT TSTTTTTSSA AAIISEKYFM GRKIKKGNRW TEDEQKAFLK  60
GLDFHGKGSW TNIAKDFVPT RTSTQVASHA QKYFVRLLDA NSNERKKRKK SSVFDLRIEK  120
TEHLEIKTED THQAIVPLGN NQESVQETHN VPSFVPNYMM KRVPTVMPPL TWVYMYPYND  180
HYASTSISTT TFDKPLSGIS SSSSSSSEDN NLKLKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048335
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755231e-114HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057414.14e-94probable transcription factor At5g61620
TrEMBLM1CNS81e-160M1CNS8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000714381e-161(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.13e-19MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]