PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048336
Common NameLOC107058473
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 253aa    MW: 28642.8 Da    PI: 8.315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048336genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.4e-055981123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C+k Fs+k  L  H++ H
  PGSC0003DMP400048336 59 FSCNFCKKEFSTKQALGGHQNGH 81
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.6E-54485IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-65686No hitNo description
PROSITE profilePS5015711.3655986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDAFAMKKSC SSKASSISSA SEESHEVITN TKKMKEKSME DTQLKTHEQI RHSSKTKIFS  60
CNFCKKEFST KQALGGHQNG HKQERALSKR QKKLVGVVQP FEHPNYHPYY SPYSKLNSHM  120
SFHSSFTNQS PFGVNGDSYV IHKPTFYQTW SCFSRYNYRF NPVKWPSSSS FFSTKNLLGN  180
NNSDMIGTRV DALENSLNSE SKNSVEGLNL KDSQVNIDGN LGGNSYMQMK LEDGDAEKNN  240
EEEEELDLDL KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048336
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159700.10.0PREDICTED: zinc finger protein 1-like
TrEMBLM1CNS90.0M1CNS9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000714400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.17e-17zinc-finger protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]