PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048491
Common NameLOC102589735
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 300aa    MW: 35378.8 Da    PI: 7.997
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048491genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.76.2e-181051243
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                           i+n++ r+ t+ kR++g+ KKAeELS+LC+++ +vii++ +
  PGSC0003DMP400048491 10 LIKNERSRNLTYQKRKKGLEKKAEELSILCQVKLCVIIYGDK 51
                          59*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.614151IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-16162IPR002100Transcription factor, MADS-box
CDDcd002661.45E-22287No hitNo description
SuperFamilySSF554551.12E-19294IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-161150IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRKKIGMEL IKNERSRNLT YQKRKKGLEK KAEELSILCQ VKLCVIIYGD KVQEEPTTLW  60
PEKETVQSLI ESYRGRSDDD RRLRTHDLSF YFREIAKKVE MESSKLRKKN YEAKYPTWDQ  120
FYDNLSTHQL KQIASSLEAK IELIKQRMEY LKGTQRISLE DMQGMSYVGK QTIATPQPCI  180
MQSLVRKNSL QLEIIEEEQQ PLDVPPTMNF PAEMMMMINT HHVNNNNIIV ENQLGGMKGM  240
MMIDQNNMLF DDHPQPMCYF VPVVTPTNYF HHHHQYPMLP TQRGQYYYEM DHLPNNDMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048491
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754468e-93HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342405.10.0PREDICTED: agamous-like MADS-box protein AGL31
TrEMBLM1CP540.0M1CP54_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000716820.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-20M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]