PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048605
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 63aa    MW: 7527.78 Da    PI: 11.0715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048605genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-10250555
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                          h   Er+RR+ +    + Lr+llP       ++K s  +   +Av+YIk+Lq
  PGSC0003DMP400048605  2 HRDLERQRRQGMSILQSSLRSLLPIhY---VKGKRSVLDHMHEAVKYIKQLQ 50
                          999**********************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.493149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-9260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.43E-5251No hitNo description
SuperFamilySSF474591.41E-11260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-8250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MHRDLERQRR QGMSILQSSL RSLLPIHYVK GKRSVLDHMH EAVKYIKQLQ ENMNELERKK  60
RS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048605
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587651.15e-24PREDICTED: transcription factor bHLH36-like
RefseqXP_016481890.15e-24PREDICTED: transcription factor bHLH118-like
SwissprotQ9FLI16e-17BH036_ARATH; Transcription factor bHLH36
TrEMBLM1CPF24e-36M1CPF2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000718616e-37(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-19bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]