PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048727
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 122aa    MW: 13487.3 Da    PI: 10.8028
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048727genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00022345123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C +C++ F ++  L  H++ H
  PGSC0003DMP400048727 23 FSCLYCSRKFCTSQALGGHQNAH 45
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.65E-52050No hitNo description
PROSITE profilePS5015710.972350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MVDHQHPPMI PKPKAKVPSS RMFSCLYCSR KFCTSQALGG HQNAHKRERA ASRRNMFSTT  60
TTTTDSSDRN NNNSNMVRLH FLQNNNDMEP PSLIMPQQNG KNSFLGRIPL TGGGTITPTE  120
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048727
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-172HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168554.17e-87PREDICTED: zinc finger protein 8-like
TrEMBLM1CPN83e-85M1CPN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000720765e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92381723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.11e-13C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]