PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048814
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 100aa    MW: 11441.6 Da    PI: 6.5288
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048814genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-10448344
                          SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44
                          +WTt   +++ +a+ ++ ++     W+ Iar++g g++ ++++ ++
  PGSC0003DMP400048814  4 NWTTKQNKKFEEAIVMYDKDnngeKWHNIARYVG-GKSVEEVRRHY 48
                          8*********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.009156IPR017884SANT domain
SMARTSM007171.7E-6154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-5358IPR009057Homeodomain-like
PfamPF002492.2E-7448IPR001005SANT/Myb domain
CDDcd001671.16E-7448No hitNo description
SuperFamilySSF466897.4E-13459IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MATNWTTKQN KKFEEAIVMY DKDNNGEKWH NIARYVGGKS VEEVRRHYDL LIKDITQIEN  60
DQVPLPNYRT TSDQTNARGY ANEQSIDSYG ISLIGRSNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-215711176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048814
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755221e-118HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339257.14e-58PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB82e-26RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLM1CPU91e-67M1CPU9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000722082e-68(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-29RAD-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]