PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048853
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 134aa    MW: 14875.4 Da    PI: 4.3692
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048853genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.2e-113873137
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                          rg W + Ed +l+++v q+G+ +W++Ia+++  gR++
  PGSC0003DMP400048853 38 RGHWRPHEDAKLKELVGQYGPQNWNLIAEKLE-GRSG 73
                          899*****************************.**97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.7553378IPR017930Myb domain
SuperFamilySSF466891.12E-83674IPR009057Homeodomain-like
SMARTSM007174.3E-43791IPR001005SANT/Myb domain
PfamPF002495.0E-93873IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-113973IPR009057Homeodomain-like
CDDcd001674.91E-84175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MENKFKDEEE GLVDLIGIKE TNHNNNNNIN GGTKLCSRGH WRPHEDAKLK ELVGQYGPQN  60
WNLIAEKLEG RSGLSRDEEE VKMGLYGNMS DTNSEISASE SVANNMTNIV KIYEDEDDVK  120
TVNFIDFLGV GAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048853
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754492e-88HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755222e-88HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335087.11e-40Myb-like DNA-binding family protein
RefseqXP_015055263.11e-40transcription factor MYB54
TrEMBLM1CPY63e-92M1CPY6_SOLTU; Uncharacterized protein
STRINGSolyc10g081320.1.15e-40(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-19myb domain protein 56
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]