PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048896
Common NameLOC102587642
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 197aa    MW: 22062.8 Da    PI: 10.0614
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048896genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA79.94.3e-2550105158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           ++p++VNaKQy++Il+RR+ Rak  e+ +l  k rkp+lh SRh hA+ RpRg gGrF
  PGSC0003DMP400048896  50 ESPIFVNAKQYHGILRRRKFRAKEMEK-NL-LKPRKPFLHLSRHLHAKSRPRGGGGRF 105
                           58********************97764.45.6*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.3E-2648108IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115228.67949108IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.9E-2152105IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.7E-195274IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.7E-1982105IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEQPMSSDSH ESGVSMQSYN MDYQGHFDLG LFGQSLGRIM LPLNLTSHDE SPIFVNAKQY  60
HGILRRRKFR AKEMEKNLLK PRKPFLHLSR HLHAKSRPRG GGGRFLNTRK TNGSINDDAN  120
GTTKTSNKKC HHTISQNSEV LQSDVFNFNS TKETTNNMSS IEAFLDTTNT GHDILMASKW  180
GSAAAVDSYC CRNLKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-1450118271NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A1e-1450108262HAPB protein
4g92_A1e-1450108262HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048896
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-143HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339173.11e-147PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
RefseqXP_015165468.11e-147PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBLM1CQ291e-145M1CQ29_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000723221e-146(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.36e-34nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]