PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048918
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 190aa    MW: 21285.8 Da    PI: 7.7145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048918genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.83.8e-3230135199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k ltpsdv+k++rlv+pk+ ae++       + + e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F
  PGSC0003DMP400048918  30 FEKPLTPSDVGKLNRLVIPKQNAEKYfplndsiNDSGEKGFLLSFEDELGKLWKFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDVVLF 118
                           99****************************99944556899************************************************ PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                           ++++ ++ + +++++rk
  PGSC0003DMP400048918 119 ERHRVDGDRQFIGWRRK 135
                           *8777888899**9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-3924136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-3125133IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-2728125No hitNo description
PfamPF023625.2E-2930136IPR003340B3 DNA binding domain
PROSITE profilePS5086313.98730135IPR003340B3 DNA binding domain
SMARTSM010198.9E-2430136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEESSRNSSS PPKQNSNQLE EIEIPKEHLF EKPLTPSDVG KLNRLVIPKQ NAEKYFPLND  60
SINDSGEKGF LLSFEDELGK LWKFRYSYWN SSQSYVLTKG WSRFVKEKKL DAGDVVLFER  120
HRVDGDRQFI GWRRKNGDAV AAAAATTVAP PGGGGGWGQV HPFPSAGVPY QTDFLHAGCV  180
FFFNTYLSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-48261354113B3 domain-containing transcription factor NGA1
5os9_B7e-48261354113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048918
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1979790.0HQ197979.1 Solanum tuberosum clone BAC BC163l15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339143.21e-130PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ9FNI32e-57Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLM1CQ501e-138M1CQ50_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000723541e-129(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.27e-58B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]