PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048931
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 155aa    MW: 16915.4 Da    PI: 9.6578
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048931genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.29.1e-342882155
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl
  PGSC0003DMP400048931 28 KPRLKWTPDLHERFIEAVTQLGGADKATPKSVLKLMGIPGLTLYHLKSHLQKYRL 82
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.1322585IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-322684IPR009057Homeodomain-like
SuperFamilySSF466891.76E-172785IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-242883IPR006447Myb domain, plants
PfamPF002492.0E-103081IPR001005SANT/Myb domain
PfamPF143792.0E-10127149IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSFPERHLFL QGGNANGDSG LVLSTDAKPR LKWTPDLHER FIEAVTQLGG ADKATPKSVL  60
KLMGIPGLTL YHLKSHLQKY RLSKNHHGQA NLSGVNKAAA SMEKICESTG SPTSNPSIGP  120
QPNNNIPISE AIQMQIDVQR RLHEQLEVRN CCKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-232884258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-232884258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-232884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-232884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-232884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-232884157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-232884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-232884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-232884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-232884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-232884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-232884258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048931
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754492e-79HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339132.11e-104PREDICTED: uncharacterized protein LOC102602766 isoform X3
SwissprotQ9SQQ96e-66PHL9_ARATH; Myb-related protein 2
TrEMBLM1CQ631e-111M1CQ63_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000723731e-104(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.11e-68G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]