PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049127
Common NameLOC102584006
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 392aa    MW: 42648.4 Da    PI: 8.6047
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049127genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.91.1e-25158201144
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgrsrsrk++e
  PGSC0003DMP400049127 158 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRSRSRKPVE 201
                           79***************************************987 PP
2QLQ44.45e-1683117236
                   QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                           +F+ aQ+q+L+ Q l++++++a++PvP+eLl  ++
  PGSC0003DMP400049127  83 YFSLAQWQELELQSLIFRHFVAGAPVPSELLHLVK 117
                           7*****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.0E-682118IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-1083116IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.43783118IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.141158202IPR014977WRC domain
PfamPF088791.3E-21159201IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDFNLKQWSN PAEERSFESE NQESPTKFPR LLLDFHSVSS DSASAAALPL FVSEPTTTCA  60
KLMSDSTTTV TTKFPRIGSG GGYFSLAQWQ ELELQSLIFR HFVAGAPVPS ELLHLVKKSI  120
IASSPLPPSY YFAHPFQQYP HYQQALMQSG YWGRAAMDPE PGRCRRTDGK KWRCSRDVVA  180
GQKYCERHVH RGRSRSRKPV EIPTPANNGS KNNNNTVSHH QAFGKMVGHA GAGAPQFSLS  240
GHSPSTNAPF HLNQRPIKGP PQEVLQKDVS IGDGKSSSGQ ILRHFFDDWP RQQQLQEGDN  300
AATSLSISMP GGGGNTSSDF SLKLSTGNDY DLGTQVSNVE QSTWGTSHHQ VASMGGPLAE  360
ALRSSMTNSS PTSVLHELAR GSTSEASYIS T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049127
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139770.0BT013977.1 Lycopersicon esculentum clone 133022R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339314.10.0PREDICTED: growth-regulating factor 3-like
TrEMBLM1CQP20.0M1CQP2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000726280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.14e-82growth-regulating factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]