PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049313
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27916.4 Da    PI: 8.4418
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049313genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-31959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifss+gklye++s
  PGSC0003DMP400049313  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLYEFCS 59
                          79***********************************************96 PP
2K-box96.15.3e-32801736100
                 K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                           g+ +++ ++++ +qe+ kLk+++e Lq++qRhllGedL++L  k+L+qLe+qL++sl++iRs+K++++l+q+ elq+ke++l e nk+L
  PGSC0003DMP400049313  80 GT-QTSPDSQNNYQEYLKLKARVEVLQQSQRHLLGEDLGQLGTKDLEQLERQLDSSLRQIRSTKTQHILDQLAELQQKEQSLTEMNKSL 167
                           44.567789******************************************************************************** PP

                 K-box  95 rkklee 100
                           r klee
  PGSC0003DMP400049313 168 RIKLEE 173
                           **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.599161IPR002100Transcription factor, MADS-box
CDDcd002651.05E-44278No hitNo description
SuperFamilySSF554551.11E-33284IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-333859IPR002100Transcription factor, MADS-box
PfamPF014868.7E-2884171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.2687177IPR002487Transcription factor, K-box
Gene3DG3DSA:3.10.150.102.5E-5151218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLYEFCSN  60
SSISKTLERY HRYNYGTLEG TQTSPDSQNN YQEYLKLKAR VEVLQQSQRH LLGEDLGQLG  120
TKDLEQLERQ LDSSLRQIRS TKTQHILDQL AELQQKEQSL TEMNKSLRIK LEELGVAFQT  180
SWHSGEQSVQ YRHEQPSQHE GFFQHVNCNN TMPISYRYDN VQPENAAPST HDAAGVVPGW  240
ML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-289217122101Developmental protein SEPALLATA 3
4ox0_B4e-289217122101Developmental protein SEPALLATA 3
4ox0_C4e-289217122101Developmental protein SEPALLATA 3
4ox0_D4e-289217122101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049313
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4485220.0AF448522.1 Lycopersicon esculentum MADS-box transcription factor MADS-RIN (MADS-RIN) mRNA, complete cds.
GenBankDQ1577960.0DQ157796.1 Lycopersicon esculentum cultivar Punjab Kesari MADS-box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075017.11e-176MADS-box protein 04g005320 isoform X1
SwissprotK4BND81e-122MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLM1CR531e-180M1CR53_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000728910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.21e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]