PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049894
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 262aa    MW: 30111.7 Da    PI: 8.5721
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049894genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-131150342
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          ien+++r+ t+ kR++  +KKA+E+S+LC+ +va + +s+
  PGSC0003DMP400049894 11 IENDTQRKATYKKRQKVAFKKAQEISTLCECKVAGVRYSE 50
                          9********************************9888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-11160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.998150IPR002100Transcription factor, MADS-box
CDDcd002668.91E-15384No hitNo description
PRINTSPR004042.3E-5323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-17395IPR002100Transcription factor, MADS-box
PfamPF003192.8E-121152IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MPRSKGKILY IENDTQRKAT YKKRQKVAFK KAQEISTLCE CKVAGVRYSE YHTKPMVYPN  60
YEDAVETFRK FETLPPADQS KNMMTTEEFI KKIIKKKEEQ LYKLQKENDI KEKTNMMHEV  120
VNGKKIISID MKTNDLNDLM YVMKQNLKFF RKLKIKADEE GSTLNASQPI SSSGTNSEGP  180
TSPTLLVPQV DPLITIPSSP MLQELMYSST PQQMDSSMNI STMPMNNYSS SESIEWDDDS  240
IMSFLMIHIS TTLMFNIQNN F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049894
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346647.11e-142PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1CSJ30.0M1CSJ3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000737190.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.16e-16M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]