PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050063
Common NameLOC102590718
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-PHD
Protein Properties Length: 709aa    MW: 80052 Da    PI: 7.3167
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050063genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.32.2e-12492536953
                           HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
              Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                           ++ +eeL ++F++n  ps+e re L+k+lg++ ++V  WF+N R+
  PGSC0003DMP400050063 492 PDAVEELRRVFAENELPSREVRENLSKQLGIEFEKVNKWFKNARY 536
                           6889****************************************8 PP
2PHD34.54.8e-12220275151
                           SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                   PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                           +C+ C+ +++  +++++lCd +C+ +fH++Cl+++l++e++p +   w+C+ Ck+k
  PGSC0003DMP400050063 220 ICAKCKLQEAfpDNDIILCDgTCNCAFHQECLDPPLSTENIPPDdeGWFCKFCKCK 275
                           588898844445********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.1E-14212278IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.3E-11216276IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.202218275IPR019787Zinc finger, PHD-finger
SMARTSM002492.4E-9220273IPR001965Zinc finger, PHD-type
PfamPF006284.4E-9220275IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590221272IPR019786Zinc finger, PHD-type, conserved site
CDDcd155042.26E-28221272No hitNo description
Gene3DG3DSA:1.10.10.607.4E-13477535IPR009057Homeodomain-like
PROSITE profilePS5007112.908481541IPR001356Homeobox domain
SMARTSM003893.0E-11483545IPR001356Homeobox domain
CDDcd000866.67E-10484536No hitNo description
SuperFamilySSF466893.04E-11484546IPR009057Homeodomain-like
PfamPF000467.2E-10492536IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MMPGKTDKDM HKAVASSSQV KNVLRRLEKK RSRLKSKSHG RSTHASLSRR TVASDGKGKC  60
CSGENILKKE ILKKAKSSKK QSVLSCEGEK LQACNSKDNL KHDNLDTGSE KLKRRRKRRR  120
RKHNSDPDDV SRLQRRTRYL LIKMKLEQNL IDAYSAEGWK GQSREKIRPE RELQRAKKQI  180
LNCKLGIREI VHHLDLLSSA GQIDDSAIAP DGSVHHEHII CAKCKLQEAF PDNDIILCDG  240
TCNCAFHQEC LDPPLSTENI PPDDEGWFCK FCKCKMEIIE ATNAHIGTHF AMDSNWENIF  300
KEEALLPEGE ESLLCPEQDW PSDDSEDDDY DPEKVANSHS STDSFESGSS SEASSGSMLG  360
SLEDELLALT GKLEDGSGGK DYLSEQIAGS DYEETTDFEV LSGPRQRKAV DYIKLNDEMF  420
GKHAPAIEQN SEDEDWGPGK RKRRRKEPES DAASTLITLF ESERSCPEKT VDEVEKESLG  480
RPAKREIFRI PPDAVEELRR VFAENELPSR EVRENLSKQL GIEFEKVNKW FKNARYTALK  540
ARKVEGTKPC QATSPTTSVG CTPETVKGEP ADHISSSDAE ENAAQTPNEE TPNLVIRPSK  600
KKHDKKAVIT STDRAETLVE SGDDVSLKLL RDRAKKQRRK INSKEREKIK EAEAEAEMQE  660
LCRIKDKIAR LQDVLRRFPN RRCRRADTSS LDESLVVFIP VAQLQEKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRRKRRRRK
2439444KRKRRR
3439445KRKRRRK
4440444RKRRR
5440446RKRRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050063
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361653.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-147PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLM1CSX20.0M1CSX2_SOLTU; Uncharacterized protein
STRINGSolyc07g008730.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.24e-96pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]