PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050347
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 290aa    MW: 31964.8 Da    PI: 10.2237
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050347genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-125094147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  PGSC0003DMP400050347 50 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 94
                          789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-1644100IPR009057Homeodomain-like
PROSITE profilePS5129414.184599IPR017930Myb domain
TIGRFAMsTIGR015571.3E-184897IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.6E-648100IPR009057Homeodomain-like
SMARTSM007176.5E-104997IPR001005SANT/Myb domain
PfamPF002494.0E-105094IPR001005SANT/Myb domain
CDDcd001679.89E-85295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVMALPNLGS FSNPTATASA AATPSTSNPL SPSDDLSKKI RKPYTITKSR ESWTEPEHDK  60
FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK SGTTEHLPPP RPKRKAAHPY  120
PQKATKSAPA VSPVPTSFQA SLPLPEPGIV KRPDSSLLPC NPATVMSVPS WTDNSVPPVS  180
SSQMKKDNVR ETGQPVTNNR CCSSNESTPR SKSTVRVMER TQVPSMRVLP DFAQVYNFIG  240
SVFDPAVTGH LQKLKKMDRI DVETVYTLFC AVSLSCRLIL FLVLFAYTT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050347
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2543608e-93AC254360.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-20n17 map 6, complete sequence.
GenBankAC2544098e-93AC254409.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-45k12 map 6, complete sequence.
GenBankAC2544218e-93AC254421.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone hba-44l22 map 6, complete sequence.
GenBankAC2544648e-93AC254464.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-62j20 map 6, complete sequence.
GenBankAC2544938e-93AC254493.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone hba-15i11 map 6, complete sequence.
GenBankAC2544988e-93AC254498.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone sle-6i6 map 6, complete sequence.
GenBankHG9754458e-93HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755188e-93HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170213.10.0PREDICTED: protein REVEILLE 6
SwissprotQ8H0W38e-89RVE6_ARATH; Protein REVEILLE 6
TrEMBLM1CTJ20.0M1CTJ2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000743440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-73MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]