PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050688
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YC
Protein Properties Length: 142aa    MW: 15669 Da    PI: 10.0666
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050688genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC57.43.2e-18181031498
                 NF-YC  14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 
                            d ++ ++P++r+kki+k d+d+++i aea  l++ + elf+  l+ +s   a e+kr+t+k   +  av+r + + dfl+d  p 
  PGSC0003DMP400050688  18 GDTHQLQIPISRVKKIMKLDQDINKINAEALHLIASSTELFLELLAEKSAQVALEKKRKTIKLEHLRVAVKRHQpTSDFLLDSLPM 103
                           6788999**********************************9999*************************9976489*****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.6E-211988IPR009072Histone-fold
SuperFamilySSF471134.34E-2021104IPR009072Histone-fold
PfamPF008081.1E-192487IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAGEDEEGTS TVAVAVAGDT HQLQIPISRV KKIMKLDQDI NKINAEALHL IASSTELFLE  60
LLAEKSAQVA LEKKRKTIKL EHLRVAVKRH QPTSDFLLDS LPMPSQPSDR SPKVQSRPRS  120
STDKPLPSGT RRIEAFFQKC T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-166HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239516.21e-88nuclear transcription factor Y subunit C-2
TrEMBLM1CU912e-97M1CU91_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000748413e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-49nuclear factor Y, subunit C13
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]