PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050744
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 529aa    MW: 58180.4 Da    PI: 7.4384
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050744genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.9e-191775357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+++Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PGSC0003DMP400050744 17 KYVRYTPEQVDALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                          5678*****************************************************97 PP
2START178.44.3e-561623702205
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           laee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v s+g  
  PGSC0003DMP400050744 162 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVMSTGng 249
                           7899******************************************************.8888888888******************** PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l +++l+a+++l+p Rdf+  Ry+  +++g++vi+++S++++q+ p+    +s+vRa  lpSg+li+p+++g+s +++v+h+dl+
  PGSC0003DMP400050744 250 GTIELLYMQLYAPTTLAPaRDFWLMRYTSVMEDGSLVICERSLNNTQNGPSmppVQSFVRADILPSGYLIRPCEGGGSIIHIVDHMDLE 338
                           *************************************************9998899********************************* PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrqce 205
                            ++++++lr+l++s++   ++t++a+l+++++
  PGSC0003DMP400050744 339 PWSVPEVLRPLYESSTLLSQRTTMAALRHLRQ 370
                           ***************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.581276IPR001356Homeobox domain
SMARTSM003896.4E-161480IPR001356Homeobox domain
SuperFamilySSF466897.7E-171678IPR009057Homeodomain-like
CDDcd000861.46E-161777No hitNo description
PfamPF000461.7E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-191975IPR009057Homeodomain-like
CDDcd146867.42E-669108No hitNo description
PROSITE profilePS5084825.755152380IPR002913START domain
CDDcd088755.08E-83156371No hitNo description
SMARTSM002349.8E-40161371IPR002913START domain
Gene3DG3DSA:3.30.530.203.3E-22162367IPR023393START-like domain
PfamPF018522.3E-53162370IPR002913START domain
SuperFamilySSF559612.61E-37162372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MAVTSSCKDK FGMDSGKYVR YTPEQVDALE RLYHECPKPS SLRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKESS RLQGVNRKLT AMNKLLMEEN DRLQKQVSQL VYENSFFRQQ  120
TQTAALATTD NNSCESVVTS GQHNLTPQRP PRDASPAGLL SLAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIIAIS HGCSGVASRA CGLVGLEPTR VAEILKDRPS WFRDCRAVDV  240
LNVMSTGNGG TIELLYMQLY APTTLAPARD FWLMRYTSVM EDGSLVICER SLNNTQNGPS  300
MPPVQSFVRA DILPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTLLSQRT  360
TMAALRHLRQ ISQEISHPTV SGWGRRPAAL RALGQRLSKG FNEAVNGFTD EGWSMLESDG  420
IDDVTILVNS SPSKLMGANL SYANGFPSMS SAVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADSGIDAYS AAAVKAGPCS IPVTRTGSFG GQIILPLAHT IEHEEASD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050744
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359741.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLM1CUD30.0M1CUD3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000749320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  4. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  5. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  6. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  7. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  8. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  9. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]