PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050751
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 151aa    MW: 17402.8 Da    PI: 9.6586
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050751genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.22.9e-15452351
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          +e+k  r+vtfskR+  ++ KA E S L++a+v ++++s++g+ y y+s
  PGSC0003DMP400050751  4 VESKDARYVTFSKRKLSLFNKATEFSSLTGADVGILLISPSGRPYSYAS 52
                          799****************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.2E-12153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-16167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.549154IPR002100Transcription factor, MADS-box
PfamPF003197.2E-18450IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-51631IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-53152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MKLVESKDAR YVTFSKRKLS LFNKATEFSS LTGADVGILL ISPSGRPYSY ASTSTENITH  60
KFLEWKLENP NVVDQADEGK SNVFKTFDDL YEEVQIMNEK EKNRKWRYKI LYPGSQVPPD  120
KQRLEKLVAH KLRLEKIKEE ANNYNLTGTH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050751
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084332.12e-84agamous-like MADS-box protein AGL29
TrEMBLM1CUD91e-107M1CUD9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000749411e-107(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-17AGAMOUS-like 29
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]