PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051243
Common NameLOC102590610
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family DBB
Protein Properties Length: 331aa    MW: 36491.1 Da    PI: 7.3692
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051243genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.2e-08442537
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                           C+ +++ke+  fC+ ++  lC+dC    H+       H
  PGSC0003DMP400051243  4 QCDVCNKKEAVVFCTADEAALCDDCDHRVHHVnklaskH 42
                          7*************************9997323555555 PP
2zf-B_box21.93.6e-075492238
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                          ++++C+ ++e +  lfC++++  +C++C   +Hk   Ht
  PGSC0003DMP400051243 54 QAPMCDICQERRGFLFCQQDRAIMCRECDIPIHKAneHT 92
                          7899*******9*********************877865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.779147IPR000315B-box-type zinc finger
CDDcd000212.77E-7347No hitNo description
PfamPF006435.2E-6443IPR000315B-box-type zinc finger
SMARTSM003367.4E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.62753100IPR000315B-box-type zinc finger
SMARTSM003363.8E-1453100IPR000315B-box-type zinc finger
PfamPF006431.4E-55492IPR000315B-box-type zinc finger
CDDcd000211.31E-85692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKIQCDVCNK KEAVVFCTAD EAALCDDCDH RVHHVNKLAS KHQRFSLLQP SPKQAPMCDI  60
CQERRGFLFC QQDRAIMCRE CDIPIHKANE HTQKHNRYLL TGIKLSANSD LYSAPSQLQS  120
QSQSQSAISS ADLCVSNLKS QNPISKSVAG SVSVSSTNTS NTKGGAVSSV VESVKVVKEK  180
VGGCNNNVQL VNGGGNNLTS SISEYLEMLP GWHVEDFLDC STPNVYSKNI GDEDMLSFWD  240
TDLESQLSSF PPQNVGIWVP QAPPLPESKQ ETQIQFFPSQ NLNFGGKIGL KESREVTNIK  300
SSRKWTDDNS FAVPQMKPPS TSFKRSRTLW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051243
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342575.10.0PREDICTED: B-box zinc finger protein 20-like
TrEMBLM1CVJ90.0M1CVJ9_SOLTU; B-box zinc finger protein 16
STRINGPGSC0003DMT4000756520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.19e-54salt tolerance homolog2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]