PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051255
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 307aa    MW: 35250.3 Da    PI: 6.849
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051255genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.18.5e-331972255
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          prlrWtp+LH++Fv+a+e+LGG++kAtPk +l++m+v gLt++hvkSHLQ+YR+
  PGSC0003DMP400051255 19 PRLRWTPDLHHCFVHAIEKLGGQDKATPKLVLQMMDVRGLTISHVKSHLQMYRS 72
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-311575IPR009057Homeodomain-like
PROSITE profilePS5129412.7581575IPR017930Myb domain
SuperFamilySSF466891.67E-151774IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-241973IPR006447Myb domain, plants
PfamPF002496.3E-92071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGNCGRNGGV RQYIRSKVPR LRWTPDLHHC FVHAIEKLGG QDKATPKLVL QMMDVRGLTI  60
SHVKSHLQMY RSMKSDVNKQ ERMSIQPRKQ VSLEDFDCHY QQQEDEGCVE QQKLMVYQYP  120
LSFSSSPNME RTDSTPYFNS VQPTKRIERC SSQRIREAVS NEYNSRNDYN IHSIMAAEKN  180
ETAQPLCNST THIFNPLTTS NELQESQFFK VMKTQDSNRD SSKRLKFEGS MKIDNVQEEE  240
EEEEEDERGL SLSLSLHRPT TQRSNASSII SEISETISSY SGGLNWNVWH SSSEKQNVNL  300
NLSIAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-172074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-172074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-172074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-172074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-172074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-172074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-172074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-172074458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051255
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754435e-94HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355021.10.0PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
TrEMBLM1CVL00.0M1CVL0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000756680.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-34G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]